Publications

[h1]Scientific publications[/h1]

Throughout their career, HybridStat members have participates in several scientific projects, resulting in scientific publications in several domains. The following list is indicative of HybridStat members expertise:

[h2]Journals[/h2]

  • Milongo, D., Bascands, J.-L., Huart, A., Esposito, L., Breuil, B., Moulos, P., Siwy, J., Ram├¡rez-Torres, A., Ribes, D., Lavayssi├¿re, L., Del Bello, A., Muscari, F., Alric, L., Bureau, C., Rostaing, L., Schanstra, J.-P., Kamar, N.:┬áPretransplant urinary proteome analysis does not predict development of chronic kidney disease after liver transplantation.┬áLiver Int. 2014 Dec 17. doi: 10.1111/liv.12763. [Epub ahead of print] (PubMed)
  • Nikolaou, K.C., Moulos, P., Chalepakis, G., Hatzis, P., Oda, H., Reinberg, D., Talianidis, I.:┬áSpontaneous development of hepatocellular carcinoma with cancer stem cell properties in PR-SET7-deficient livers.┬áEMBO J. 2014 Dec 16. pii: e201489279. [Epub ahead of print] (PubMed)
  • Moulos, P., Hatzis, P.: Systematic integration of RNA-Seq statistical algorithms for accurate detection of differential gene expression patterns.┬áNucleic Acids Res. 2014 Dec 1. pii: gku1273. [Epub ahead of print] (PubMed).
  • Moulos, P., Klein, J., Jupp, S., Stevens, R., Bascands, J.-L., Schanstra, J.-P.: The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases. BMC Bioinformatics 2013, 14:235 (PubMed).
  • Fotakis, C., Christodouleas, D., Kokkotou, K., Zervou, M., Zoumpoulakis, P., Moulos, P., Liouni, M., Calokerinos, A.: NMR metabolite profiling of Greek grape marc spirits. Food Chem. J. 2013, 138(2-3), 1837-1846 (PubMed).
  • Klein, J., Jupp, S., Moulos, P., Fernandez, M., Buffin-Meyer, B., Chayaa, R., Charonis, A., Bascands, J.-L., Stevens, R., Schanstra, J.-P.: A novel web application to access multi-omics data on kidney disease. FASEB J. 2012, 26(5), 2145-53. (PubMed)
  • McCalman, M.T., Rao, N.A.S., Moulos, P., Francoijs, K.J., Chatziioannou, A., Kolisis, F.N., Alexis, M.N., Stunnenberg, H.G., Mitsiou, D.J.: Coactivation of GR and NFKB alters the repertoire of their binding sites and target genes. Genome Res. 2011, 21(9), 1404-1416 (PubMed).
  • Chatziioannou, A., Kanaris, I., Doukas, C., Moulos, P., Maglogiannis, I., Kolisis, F.N.: The GRISSOM Platform: Enabling distributed Processing and Management of Biological Data through fusion of Grid and Web Technologies. IEEE Transactions on Information Technology in Biomedicine 2010, 15(1):83-92 (PubMed).
  • Moulos, P., Papadodima, O., Chatziioannou, A., Loutrari, H., Roussos, C., Kolisis, F.N.: A transcriptomic computational analysis of mastic oil-treated Lewis lung carcinomas reveals molecular mechanisms targeting tumor cell growth and survival. BMC Medical Genomics 2009, 2:68 (PubMed).
  • Chatziioannou, A., Moulos, P.: Exploiting statistical methodologies and controlled vocabularies for prioritized functional analysis of genomic experiments: The StRAnGER web application. Frontiers in Neuroscience 2011, 5:8 (PubMed).
  • Chatziioannou, A., Moulos, P., Kolisis, F.N.: Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB. BMC Bioinformatics 2009 10:354. (PubMed)
  • Nielsen, R., Pedersen, T.A., Hagenbeek, D., Moulos, P., Siersbaek, R., Megens, E., Denissov, S., Borgesen, M., Francoijs, K.J., Mandrup, S., Stunnenberg, H.G.: Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis. Genes Dev 2008, 22(21):2953-2967 (PubMed).

[h2]Conference proceedings[/h2]

  • Moulos, P., Kanaris, I., Bontempi, G.: Stability of feature selection algorithms for classification in high-throughput genomics datasets. Conf Proc 13th IEEE Bioinformatics and Bioengineering (BIBE), 2013, 1-4 (Link).
  • Moulos, P., Valavanis, I., Klein, J., Maglogiannis, I., Schanstra, J.-P., Chatziioannou, A.: Unifying the integration, analysis and interpretation of multi-omic datasets: exploration of the disease networks of Obstructive Nephropathy in children. Conf Proc IEEE Eng Med Biol Soc. 2011, 3716-9 (Link).
  • Valavanis, I., Moulos, P., Klein, J., Maglogiannis, I., Schanstra, J.-P., Chatziioannou, A.: Intelligent Selection of human miRNAs and mouse mRNAs related to Obstructive Nephropathy. IFIP Advances in Information and Communication Technology (AIAB 2011), 2011, 364, 464-471 (Link).
  • Chatziioannou, A., Moulos, P.: ANDROMEDA: A MATLAB Automated cDNA Microarray Data Analysis Platform. AIAI 2007: 127-136, 19-21/9/2007, Athens, Greece (Link).
  • Chatziioannou, A., Moulos, P.: Extending the Interpretation of Gene Profiling Microarray Experiments to Pathway Analysis Through the Use of Gene Ontology Terms. ICCS 2007: 55-61, 22-27/7/2007, Sheffield, England (Link).
  • Chatziioannou, A., Moulos, P., Pilalis, E., Kolisis, F.N., Maglogiannis, I., Doukas, C.: GRISSOM web based grid portal: Exploiting the power of grid infrastructure for the interpretation and storage of DNA microarray experiments, ITAB 2009: 1-5 (Link).

[h2]Book chapters[/h2]

  • Chatziioannou, A., Moulos, P.: DNA Microarrays: Analysis and Interpretation. In: Exarchos, T.P., Papadopoulos, A., Fotiadis, D.I.: Handbook of Research on Advanced Techniques in Diagnostic Imaging and Biomedical Applications, 2009 (Link).
  • Chatziioannou, A., Moulos, P.: Interpretation of Gene Expression Microarray Experiments. In: Maglogiannis, I., Karpouzis, K., Wallace, B.A., Soldatos, J.: Emerging Artificial Intelligence Applications in Computer Engineering, 2007 (Link).